Just run following commands after login to the server via ssh as root.
[/home/user/public_html]# find . -type f -exec chmod 0644 {} \; // To change permission for all files under public_html directory to 644
[/home/user/public_html]# find . -type d -exec chmod 0755 {} \; // To change permission for all directories under public_html directory to 755
[/home/user/public_html]# find . -type f -exec chmod 0644 {} \; // To change permission for all files under public_html directory to 644
[/home/user/public_html]# find . -type d -exec chmod 0755 {} \; // To change permission for all directories under public_html directory to 755
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